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Kensaku Nishikata


Current Position
Ph.D. candidate, Graduate School of Information Science, NAIST
Corporate research staff, Integrated Database Group,
     Japan Biological Information Research Center, Japan Biological Informatics Consortium
Research and development staff, VALWAY Technology Center, NEC Soft, Ltd.



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Research Interests
  • Protein-protein interaction(PPI) network analysis
  • Prediction of protein-complexes or functional units based on protein-protein interaction(PPI) data
  • Search for binding sites/motif/domain on protein-protein interaction
  • Development of human protein-protein interaction database in JBIRC
    • PPI view



    Education
  • 1978, Born in Tokyo
  • March 2002, B.S. in Biological Science and Technology, Faculty of Industrial Science and Technology, Tokyo University of Science
  • March 2004, M.E. in Bioinformatics and Genomics, Graduate School of Information Science, NAIST
  • April 2004, Research and development staff, VALWAY Technology Center, NEC Soft, Ltd.
  • August 2005, Corporate research staff on loan, Integrated Database Group, Japan Biological Information Research Center, Japan Biological Informatics Consortium
  • October 2006, Ph.D. candidate in Bioinformatics and Genomics, Graduate School of Information Science, NAIST



    • Selected Publications & Conference Proceedings(Reviewed)
  • Arifuzzaman M., Maeda M., Itoh A., Nishikata K., Takita C., Saito R., Ara T., Nakahigashi K., Huang, H.C., Hirai A., Tsuzuki K., Nakamura S., Altaf-Ul-Amin M., Oshima T., Baba T., Yamamoto N., Kawamura T., Ioka-Nakamichi T., Kitagawa M., Tomita M., Kanaya S., Wada C. and Mori H., "Large-scale identification of protein-protein interaction of Escherichia coli K-12", Genome Research 16: 686 - 691, May 2006. [PubMed]
  • Md. Altaf-Ul-Amin, Kensaku Nishikata, Toshihiro Koma, Teppei Miyasato, Yoko Shinbo, Md. Arifuzzaman, Chieko Wada, Maki Maeda, Taku Oshima, Hirotada Mori, Shigehiko Kanaya, "Prediction of Protein Functions Based on K-cores of Protein-Protein Interaction Networks and Amino Acid Sequences", The 14th International Conference on Genome Informatics December 14-17, 2003, Yokohama Japan.





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