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Journal Club

>>2007
5/18
 ・「Metagenomic analysis of the human distal gut microbiome」
(Science 312, 1355 (2006))

5/11
 ・「Conservation of the metabolomic response to starvation across two divergent microbes」
(PNAS, 103(51), pp.19302-19307 (2006) )
 ・「An extensive repertoire of type III secretion effectors in Escherichia coli O157
                        and the role of lambdoid phages in their dissemination」
(PNAS 2006;103;14941-14946; originally published online Sep 21, 2006)

4/13
 ・「Flavonoids and isoflavonoids - a gold mine for metabolic engineering」
(1360 - 1385/99/$ D see front matter c 1999 Elsevier Science Ltd. PII: S1360-1385(99)01471-5)
 ・「Functional profiling of the Saccharomyces cerevisiae genome」
(NATURE |VOL 418 | 25 JULY 2002)

4/10
 ・「Oligonucleotide bias in B. subtilis: general trends and taxonomic comparisons」
(Nucleic Acids Research, 1998, Vol. 26, No. 12 2971.2980)
 ・「DNA microarray technologies for measuring protein--DNA interactions」
(Current Opinion in Biotechnology 2006, 17:422.430)

3/16
 ・「GC-compositional strand bias around transcription start sites in plants and fungi」
(BMC Genomics 2005, 6:26 doi:10.1186/1471-2164-6-26)
 ・「Relating protein pharmacology by ligand chemistry」
(NATURE BIOTECHNOLOGY VOLUME 25 NUMBER 2 FEBRUARY 2007)

3/2
 ・「Summaries of Affymetrix GeneChip probe level data.」
(Nucleic Acids Res. 2003 Feb 15;31(4):e15.)
 ・「A universally applicable method of operon map prediction on
                         minimally annotated genomes using conserved genomic context」
(Nucleic Acids Research, 2005, Vol. 33, No. 10 3253.3262)




>>2006
11/24
 ・「Sequencing and Analysis of Neanderthal Genomic DNA」
(Science 314, 1113 (2006);)
 ・「Structural basis for messenger RNA movement on the ribosome」
(Vol 444| 16 November 2006| doi:10.1038/nature05281)

11/17
 ・「he role of IFN regulatory factor-3 in the cytotoxic activity of NS-9,
               a polyinosinic-polycytidylic acid/cationic liposome complex, against tumor cells」
(Mol Cancer Ther 2005;4(5).May 2005)
 ・「Conditional telomerase induction causes proliferation of hair follicle stem cells」
(Vol 436|18 August 2005|doi:10.1038/nature03836)

11/10
 ・「Development and implementation of an algorithm for detection of protein complexes in large interaction networks」
(BMC Bioinformatics. 7(1):207 (2006))

10/27
 ・「Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans」
(Nature 391, 806-811, 1998)
 ・「A general approach to single-nucleotide polymorphism discovery」
(Nature Genetics 1999 Dec Vol 23)

10/20
 ・「Finding and evaluating community structure in networks」
(M.E.J.Newman, M.Girvan, PHYSICAL REVIEW E 69, 026113)
 ・「Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans」
(Nature 391, 806-811, 1998)

10/13
 ・「Bacillus subtilis tRNAPro with the anticodon mo5UGG can recognize the codon CCC」
(0167-4781/$ - see front matter D 2005 Elsevier B.V. doi:10.1016/j.bbaexp.2005.02.011)
 ・「Gene context conservation of a higher order than operons」
(TIBS 25 . OCTOBER 2000)

10/6
 ・「Extracting Gene Networks for Low-Dose Radiation Using Graph Theoretical Algotithms」
(PLoS Computational biology 2006 Vol. 21 pp.0757-0768)

9/22
 ・「The Structure and Distribution of the Flavonoids in Plants」
(J. Plant Res. 113: 287-299, 2000)
 ・「Automated search of nativery folded protein fragments for
                       high-throughput structure determination in structural genomics」
(Protein Science ~2000!, 9:2313.2321. Cambridge University Press. Printed in the USA.)

9/8
 ・「Characterization of a Forest Soil Metagenome Clone That Confers Indirubin
                                and Indigo Production on Escherichia coli」
(PNAS  January 10, 2006  vol. 103  no. 2  425.430)
9/1
 ・「Natural Malaria Infection in /Anopheles gambiae/ Is Regulated by a Single Genomic Control Region」
(/Science/ 28 April 2006: Vol. 312. no. 5773, pp. 577 - 579)
 ・「How to become a uropathogen: Comparative genomic analysis of
                           extraintestinal pathogenic /Escherichia coli/ strains」
(PNAS 2006 103: 12879-12884;)

8/25
 ・「A functional SNP in PSMA6 confers risk of myocardial infarction in the Japanese population」
(NATURE GENETICS VOLUME 38 [ NUMBER 8 [ AUGUST 2006)
 ・「Integration of transcriptomics and metabolomics for understanding of
                     global responses to nutritional stresses in Arabidopsis thaliana 」
(PNAS | July 6, 2004 | vol. 101 | no. 27 | 10205-10210 )

8/18
 ・「Classifying G-protein coupled receptors with support vector machines」
(BIOINFORMATICS Vol.18 no.1 2002 Pages 147-159)
 ・「Pathogenic fungus harbours endosymbiotic bacteria for toxin production」
(Vol 437|6 October 2005|doi:10.1038/nature03997)

8/4
 ・「The ring of life provides evidence for a genome fusion origin of eukaryotes」
(NATURE |VOL 431 | 9 SEPTEMBER 2004 |www.nature.com/nature)
 ・「Metabolites: a helping hand for pathway evolution?」
(TRENDS in Biochemical Sciences Vol.28 No.6 June 2003)